max_line_length = 15 graphic_record = translator. subplots ( 2, 1, figsize = ( 10, 3 ), sharex = True, gridspec_kw =, ) translator. translate_record ( record ) fig, ( ax1, ax2 ) = plt. read ( 'example_sequence.gb', 'genbank' ) translator = BiopythonTranslator () graphic_record = translator. fill_between ( xx, yy, alpha = 0.3 ) ax. ''' import matplotlib.pyplot as plt from dna_features_viewer import BiopythonTranslator from Bio import SeqIO import numpy as np def plot_local_gc_content ( record, window_size, ax ): '''Plot windowed GC content on a designated Matplotlib ax.''' def gc_content ( s ): return 100.0 * len () / len ( s ) yy = ) for i in range ( len ( record. Local GC content in the record's sequence. '''In this example we plot a record's annotations on top of the curve of the savefig ( 'custom_biopython_translator.png' ) translate_record ( 'example_sequence.gb' ) ax, _ = graphic_record. Just because.''' return graphic_record = MРµСљСљustomTranslator (). compute_feature_label ( self, feature ) def compute_filtered_features ( self, features ): '''Do not display promoters. type = 'CDS' : return 'CDS here' else : return BiopythonTranslator. type = 'restriction_site' : return None elif feature. type = 'terminator' : return 'green' else : return 'gold' def compute_feature_label ( self, feature ): if feature. type = 'CDS' : return 'blue' elif feature. ''' def compute_feature_color ( self, feature ): if feature. For CDS labels just write 'CDS here' instead of the name of the gene. Do not display labels for restriction sites. Do not display features that are restriction sites unless they are BamHI Color terminators in green, CDS in blue, all other features in gold. РёвЂЎР„РµВ®С™Рґв„–вЂ°Р·вЂ°в„–РµС•РѓРёВ§Р€Р№вЂЎР‰Рµв„ўРЃР”Р‡rom dna_features_viewer import BiopythonTranslator class MРµСљСљustomTranslator ( BiopythonTranslator ): '''Custom translator implementing the following theme: savefig ( 'graphic_record_defined_by_hand.png' ) # PLOT AND EXPORT A CIRCULAR VIEW OF THE CONSTRUCT circular_rec = CircularGraphicRecord ( sequence_length = 1000, features = features ) ax2, _ = circular_rec. ''' from dna_features_viewer import ( GraphicFeature, GraphicRecord, CircularGraphicRecord, ) features = # PLOT AND EXPORT A LINEAR VIEW OF THE CONSTRUCT record = GraphicRecord ( sequence_length = 1000, features = features ) ax, _ = record. '''Simple example where a few features are defined 'by hand' and are displayedР”Р„nd exported as PNG, first with a linear view, then with a circular

Snapgene viewer install